Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1001615 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1001615 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13112
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (52.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13112

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (52.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F039497	Metagenome / Metatranscriptome	163	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F082149	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100161514	F048123	GGAG	MKPRYDFNKGKLISYDGEIIEFAETKAIDKYADQVQEIMALFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKSNISKIAERMYNFRPF*
Ga0119951_10016152	F082149	AGG	MKLGLHIDWCVGRWFGRDNNLEINVCLPTISLGYKNEDNDKWFGFKFNLKTDISFESYEYGKIFSLIILGFGVKLSKFNL*
Ga0119951_100161524	F064403	GGAG	MNNPRSKILSDLKKAYLKEHPATLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF*
Ga0119951_100161529	F049419	GGA	MNKKIDWLNLATTYLFFGIVYGTIITLSWNYLFEPTFNIHLSILQGFGIHLICRILFGNTNTNYISNFYSQKAPDLDKIDSYLKEFQEQLDKESEEVEKQYQDLDKKD*
Ga0119951_10016153	F039497	N/A	MSEEDNFNSEAGNQLRDMLYKDIVRYAQESDMTAYQAIGVLESLKFDLLNAMRNATREDEDEI*
Ga0119951_100161540	F062446	N/A	MTFNPIKIIAFMVILLAWILMTFFFIGCANSSYHTIPNAMCEDSQNYSTKYNMMDSQDGSKNPNAQADILNIKY*
Ga0119951_10016159	F024040	GAGG	MNIYVTGHNWLAKVDIDTKTIDKTDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKCKEDGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1001615

Overview

Ecosystem & Geography

Associated Families

Sequences