Scaffold Ga0119951_1001145

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1001145
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16109
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F011214	Metagenome / Metatranscriptome	293	Y
F053106	Metagenome / Metatranscriptome	141	Y
F054798	Metagenome / Metatranscriptome	139	N
F056376	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10011451	F011214	N/A	LDAKKRKKSIRWHERGDWFLNGELDLDYLANVTWACESILADGDTLPDMWFYTHIYDSRLVTLEKYMNVYASVHDTNDMNEAMAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRKELPKLVVLNGSKFVTCPEIRRGRSVITCTGTKDSIACDMCVKGLANVLFPAH*
Ga0119951_10011453	F053106	GGAG	MAKFYVKSGTLEVIISRKDALEASIAGLLMTNKFDTIDEYFYADERGYRDYVSADNNTNVIPTKSIVRAAGWELSRDDDPLP*
Ga0119951_100114532	F056376	N/A	MNLIPCFSNVIGHKEAQELVVDLNQMKSDSSEDFYIKYDEYQDYSTDDNYLVIGNVTQEDWDELNLDMDFIEGSVF*
Ga0119951_100114538	F054798	GAGG	MIYLYLNETQRLAEIVAELVKLNMAVVAELHGDRWHIEVSK*
Ga0119951_10011454	F008812	N/A	MKKVLTRRERMIQWIGLLLTVAGLVYGGIKDYQKGDIKIPQVQKHLTTVKHPIQYCLMAYDPNLDKVFYLHENGLWYDFAPEQRRYATTPQVRQGQNQSQATVGNGYGPQGTPRYAYGQSPQASAYTSRY*