Scaffold Ga0119951_1001068

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1001068
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16702
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006885	Metagenome / Metatranscriptome	362	Y
F017788	Metagenome / Metatranscriptome	238	Y
F018928	Metagenome / Metatranscriptome	232	Y
F028423	Metagenome / Metatranscriptome	191	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100106811	F045545	GAGG	MIKQISLFFICKIKSHNLINAGACPFTGKNYAACLRCGVTVTK*
Ga0119951_100106830	F017788	GAG	MKKIIITFLLITLLIPNTHAQAAAKSLNTKGNKASCKSIKAKYESEVMSKWSNGLASDKDVLKEIDLNIDMLVTKQKPTTGKIKTTIASWITAEKNTKIALDSKNVEAITAAMNLKISSITNFDKLCKSIKK*
Ga0119951_10010685	F028423	AGTAGG	MENLEKNELIQLIGFYKQKLSDVELESLKLQLEVNKLNSMVLSLSQGPVKKTK*
Ga0119951_10010686	F006885	N/A	MKYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYRQSSIYEMVKDVVPKQMFDKPKVITQSQKHIQKNMLKVVIANGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELNKMLSILDDLKQGVGPNDSSSTGNKGI*
Ga0119951_10010688	F018928	AGGAG	MIIKSLNTMEKIINKNKNLLWRGWDVIDLKESDVAKTSPMGIRIKNKWYLHRIYKPGRNGWDIPNKYKD*