Basic Information | |
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Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1001068 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16702 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (66.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006885 | Metagenome / Metatranscriptome | 362 | Y |
F017788 | Metagenome / Metatranscriptome | 238 | Y |
F018928 | Metagenome / Metatranscriptome | 232 | Y |
F028423 | Metagenome / Metatranscriptome | 191 | Y |
F045545 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0119951_100106811 | F045545 | GAGG | MIKQISLFFICKIKSHNLINAGACPFTGKNYAACLRCGVTVTK* |
Ga0119951_100106830 | F017788 | GAG | MKKIIITFLLITLLIPNTHAQAAAKSLNTKGNKASCKSIKAKYESEVMSKWSNGLASDKDVLKEIDLNIDMLVTKQKPTTGKIKTTIASWITAEKNTKIALDSKNVEAITAAMNLKISSITNFDKLCKSIKK* |
Ga0119951_10010685 | F028423 | AGTAGG | MENLEKNELIQLIGFYKQKLSDVELESLKLQLEVNKLNSMVLSLSQGPVKKTK* |
Ga0119951_10010686 | F006885 | N/A | MKYLLVIGLTLLSYWSIIKISNKRRMIFLNKNKYRQSSIYEMVKDVVPKQMFDKPKVITQSQKHIQKNMLKVVIANGSAYWILNNVFYTANAINGRVDEETIKPLDIENMPTKELNKMLSILDDLKQGVGPNDSSSTGNKGI* |
Ga0119951_10010688 | F018928 | AGGAG | MIIKSLNTMEKIINKNKNLLWRGWDVIDLKESDVAKTSPMGIRIKNKWYLHRIYKPGRNGWDIPNKYKD* |
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