NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0119951_1000878

Scaffold Ga0119951_1000878


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1000878 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18682
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F014843Metagenome / Metatranscriptome259Y
F025484Metagenome / Metatranscriptome201Y
F035737Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100087811F035737GGAGGMTKKFVVNDEEWAQVLEKGVEDYTDMLFEAVWDGTEDVIPETLSGEPFCGCGACFWREALFFLVPRLIEGYEEGKIELED*
Ga0119951_100087825F009741GAGGMTQHVDGVYDYTKPWRAPIKPDQVAKRYQYNGPWSTNAERLTSQALMVMNIPGADIQAMVRPPLPQIQLFPERYGYERKQPGIDDIVTVDRNYTEPRISWFSGGVAGYQAAERNGLGTN*
Ga0119951_100087826F025484GGAMDGDGMLSMELQARQIAENATRYNGSAPCPTCGVIMNPVEFMANRGHCLSCVTQRNAQRVKGKMA*
Ga0119951_100087828F005167N/AMNAGLEEGATDGKYRKVRPDTEVGTESSATIANRQSLHPFYGYGFATSEYPNKVNPGK*
Ga0119951_100087833F014843GGAGMLSLDGVLSSDSGDPIRAGVMLYYALNINNRVAIRTSRKKEDAEHWLNSHGIINYDDLIDYSYHLEGEDLKKRQFILSRSRAPIEMYVDADPSMCSWVFEEQGIPAIMFMNPGYLAVERRPDAPKKVRQWSDIENSITRVNLAKSKEAANPKELEFWD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.