Scaffold Ga0119951_1000877

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000877
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18705
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (48.39%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F030057	Metagenome / Metatranscriptome	186	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100087713	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSVGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNDVDSFTRANGVANTLDTFALATDFLGGFVQAGVLQFSVGSRPFATIPKPFQYAPPPGSPMDYDNTYVNQISAAPVPAAGASDVVGVPWVTQTKLRNNVYFVDPNILIEAEQQFNVKVSYPSGAVPVLATGIVNDTTNPLKIGVILDGLLLRPVQ*
Ga0119951_100087714	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLQSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRCYAGFVNQSRQPVSVGSNFTYRGYTALTNSAMEKLQTVMAQGVLEISFAQKLYYQIARPFIQCPPGFGIDIQSLASSRTGNAAETQGPGTNWSVRPDYRATSVYNIDPIQIIEPEIQIQAAINFPNGNTPSFADSALTTLNATFAPAVELGLIFDGYVIRPSQ*
Ga0119951_100087715	F024095	GGCGG	MDNTNSLPFVYVVTATLGAAVGATSSTTLIMQADSRFELMGIMGTGGVDATTENSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAANNITLALHGYKIIL*
Ga0119951_100087716	F014837	AGG	MIQRNINPKPRFVTLTSGPSTGALVGVPLATLYKAAFFRFPQDSIIHYVLVNSTLTGNGALSQGIGAIAYGQGDQTIGDNLNPGLDNFTDNVIWRDELLNPIAGVISEGKSTQIIMNEFFVHTGTGFGIYVNGINASVNINATIAFNPIAEWVNFREPTVGARI*
Ga0119951_10008772	F030057	N/A	MAIKYDIKKTLGGSLWKWEDGTEKVFTILGPIRAGKSVANPRSGIAKAPDIMSVRDAADGNEKEILVGAVLRSSLTENYSDDAYVGLTFACTQGAVKPGTRYKTMSVAEVEVANDEAPKKAKK*
Ga0119951_100087723	F023295	GGA	VKHLHRAYTQAKLLLISKRSLVLLSMLHGIGCQTKVILVPDGQPVMLAESVKAKVYAFDSAGKPVPSSNKVVLPAGWYVLPRK*
Ga0119951_100087724	F063343	N/A	MNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMVPGADRRLFSGFTASPLSFIRNAASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFANKDSRTFTYKVVNIQQVGGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTVPLTATYIAAGITTPTQTFVLPILYTGQDKKVSTADVININLAGLASVSIPAFETARAFGDGLRGGDSGNPIFAMVGDEIVLLGGWYTGADGDASVGTFPWLLYQKPAIEKIMGMKLQVADMSGLEKV*
Ga0119951_100087726	F048257	GGA	MTAFPSSVAARKLLKGENYTDSVFYVLRRTLLIRSGLRLAGEEKDLWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAIAGDAAGILGTYLLRSAIVGTGLWLSGERKHLTRNTLISTALIEASVLLWAKDQEV*