NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1000877

Scaffold Ga0119951_1000877


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1000877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18705
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (48.39%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F014837Metagenome / Metatranscriptome259Y
F016141Metagenome / Metatranscriptome249Y
F023295Metagenome / Metatranscriptome210Y
F024095Metagenome / Metatranscriptome207Y
F030057Metagenome / Metatranscriptome186Y
F048257Metagenome148N
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100087713F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSVGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNDVDSFTRANGVANTLDTFALATDFLGGFVQAGVLQFSVGSRPFATIPKPFQYAPPPGSPMDYDNTYVNQISAAPVPAAGASDVVGVPWVTQTKLRNNVYFVDPNILIEAEQQFNVKVSYPSGAVPVLATGIVNDTTNPLKIGVILDGLLLRPVQ*
Ga0119951_100087714F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLQSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRCYAGFVNQSRQPVSVGSNFTYRGYTALTNSAMEKLQTVMAQGVLEISFAQKLYYQIARPFIQCPPGFGIDIQSLASSRTGNAAETQGPGTNWSVRPDYRATSVYNIDPIQIIEPEIQIQAAINFPNGNTPSFADSALTTLNATFAPAVELGLIFDGYVIRPSQ*
Ga0119951_100087715F024095GGCGGMDNTNSLPFVYVVTATLGAAVGATSSTTLIMQADSRFELMGIMGTGGVDATTENSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAANNITLALHGYKIIL*
Ga0119951_100087716F014837AGGMIQRNINPKPRFVTLTSGPSTGALVGVPLATLYKAAFFRFPQDSIIHYVLVNSTLTGNGALSQGIGAIAYGQGDQTIGDNLNPGLDNFTDNVIWRDELLNPIAGVISEGKSTQIIMNEFFVHTGTGFGIYVNGINASVNINATIAFNPIAEWVNFREPTVGARI*
Ga0119951_10008772F030057N/AMAIKYDIKKTLGGSLWKWEDGTEKVFTILGPIRAGKSVANPRSGIAKAPDIMSVRDAADGNEKEILVGAVLRSSLTENYSDDAYVGLTFACTQGAVKPGTRYKTMSVAEVEVANDEAPKKAKK*
Ga0119951_100087723F023295GGAVKHLHRAYTQAKLLLISKRSLVLLSMLHGIGCQTKVILVPDGQPVMLAESVKAKVYAFDSAGKPVPSSNKVVLPAGWYVLPRK*
Ga0119951_100087724F063343N/AMNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMVPGADRRLFSGFTASPLSFIRNAASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFANKDSRTFTYKVVNIQQVGGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTVPLTATYIAAGITTPTQTFVLPILYTGQDKKVSTADVININLAGLASVSIPAFETARAFGDGLRGGDSGNPIFAMVGDEIVLLGGWYTGADGDASVGTFPWLLYQKPAIEKIMGMKLQVADMSGLEKV*
Ga0119951_100087726F048257GGAMTAFPSSVAARKLLKGENYTDSVFYVLRRTLLIRSGLRLAGEEKDLWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAIAGDAAGILGTYLLRSAIVGTGLWLSGERKHLTRNTLISTALIEASVLLWAKDQEV*

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