Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1000732 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1000732 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20925
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (67.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20925

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (67.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F003304	Metagenome	494	N
F025460	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10007321	F000635	N/A	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTTRLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGIAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0119951_100073221	F003304	GAG	MEERKMKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKHYDQVTFVDADVLIANDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR*
Ga0119951_10007323	F002149	N/A	MTAVEYIEQSGVPEAMWPNLADWFSWFEKQGMVGIVEDKDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0119951_10007326	F025460	AGGAG	MAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTISNEQSLQNEDIETQRAELSDRLKDLQKKRVKQEIEIAKGDRRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYKNKLAELGFNRQAGQMETNVPDYQSEAMPLQTTPQAAPETPAQAPAQQEAPRNFKSLQEARAAGVKLGQLIYINGKPGRLQARQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1000732

Overview

Ecosystem & Geography

Associated Families

Sequences