Scaffold Ga0119951_1000584

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000584
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23744
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038598	Metagenome	165	Y
F053143	Metagenome / Metatranscriptome	141	Y
F095349	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100058426	F095349	N/A	MSWPANSSVTCETLNDNFQRETGRIALGTYRLGLYKDPYLRFVTQSAFPDNMGTVIKNTISQRTVATGTGWTDVGVNDGTQADSCLPPIKTVGYAFDQKQFNLRHQAIESNWICLEDVRTSAFPIDDVNNYIKILADNVNKEWVERYDADYLANSTKISVEPGLDSVASGVTFNSTTGLATISGMSAPTSILTPGVLRQIYDNLYQDNAGDDGDAVTDDGSPVFNVFAERATLENLIKLNNDVRQDIRWSDRVSDLLGSNGSSLLPKQSYAGFVYHSRPFPKRFNDGAGGTFVEVPPYVATTGAAKGTKYVINPAYKAAKYTSTVVFHPKAMEWLVPNPNIKVGNLVYDAQNYRGDFRWVNEYHKTCNPDKNSGYWRAKMACAVKQIFPQWGYYIIHLRCNLANDLVACPSSSGYGYLS*
Ga0119951_100058430	F053143	AGGAGG	MSKTVTLSEDQAKLVMQCLDLATKHGGLNAAAVILPVAQAIERQLTAETASSEAFAAPNS
Ga0119951_100058431	F038598	N/A	MLTNPNPITTEPVAAKVYDRLHVYSLAAIQPTTDSGSITVELLPATADGELANGSLVQRMTAPLNPEIMQAVPELAAAFQAVLAAIPATQAYLAAQQEASSNE*