Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1000520 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1000520 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25525
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (70.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25525

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (70.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F053106	Metagenome / Metatranscriptome	141	Y
F056376	Metagenome / Metatranscriptome	137	Y
F062580	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100052023	F056376	GGA	MMSLIKCFSNVTGYKEANELVIDLNQMKSDESEGFYIKYDRNQDYSKDDNYLVVGNVTQADWDELYLDMDFMEADII*
Ga0119951_100052056	F062580	GGA	MKVITINMELVIDDDIKDSHIPEYLNDKLYTDPEFFGDFGSENILSIKEFE*
Ga0119951_100052070	F053106	GGAG	MPKFYVKSNTLEVVISRKDALEASITGLLMTNKFDIIDEYFYADERGYRDYISADSKTNVISTKSIVRAAGWELSRDDNE*
Ga0119951_100052072	F000325	GGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLNNGCYAEATENQYKNARVAGFANVVTEKNKIRAMILDAKKRKKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDMKIAPKRPKSKIKAEAWRKSLPKLVVLNGTKFVTCPEIRRGRSVITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0119951_100052076	F006543	N/A	VFVGFTTITWKGFTMKKFSFVVDIVADDLDREVVVDSISTCLTDALPSDVHANVKAGEVKAFSEQGYKVWRARVTGVTAKQAGDAHNGKVESEAEAVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1000520

Overview

Ecosystem & Geography

Associated Families

Sequences