Scaffold Ga0119951_1000256

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000256
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38802
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (68.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049494	Metagenome / Metatranscriptome	146	N
F062751	Metagenome	130	N
F104750	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100025621	F062751	GGAG	MQSNMDSALQAYAEYLKECYMSRGASWAKSGFDRQLVVEFDKGSKFIKVIIGYSTDGVRDTSRSSHSFIVLKSDKFQVGDILKSASWRAPAKNFARGNVLEKSYGTISWCGA*
Ga0119951_100025623	F049494	GGA	METFLLSLQVAFVFIMWKWAEEAFEKELNHMGWLYIVASAGNAASVAVALGL*
Ga0119951_100025624	F104750	GGCGG	LDYKENMNTKLQKILADAKIGKAEFDAGSYYVCSEGTLETIIKSVVDLCADEARRYTFRSSGVPEDYNGTTNVEIEIRKLYESGN*