Scaffold Ga0119951_1000207

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000207
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41891
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (31.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F010897	Metagenome / Metatranscriptome	297	Y
F020860	Metagenome / Metatranscriptome	221	N
F035215	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_10002074	F035215	GAG	MKSSEQIAKEISDRISEYKALMIEHDNNPSAVDELESAIHELDHLLRWINE*
Ga0119951_100020759	F009669	N/A	MKNMLSKVFGPNWRSSSSGIVTVVAVCTAIAIHSDPSLVAFLPDQAEVYILGISKLIAVVSGIIFALTVKDAAVTGGTVAQTVEAKDRTNGENT*
Ga0119951_10002076	F010897	N/A	MKLINTTSYCSDKLKEIIKWCMPQGVFLKDIRKIDIGNTKLNWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRKNNIKFNLV*
Ga0119951_100020762	F010817	N/A	VTPNKIEDDKSSYDATTPKQYEKDNGGLISFIGDDAVITSQARERYNNLISMYKIKFKKEKAIELKEDSGIKPYKDNFGNELYLIDSEHLVYFGVLNSWLKEKVPADNIIDKTIDKINN*
Ga0119951_10002079	F020860	AGTAG	MNITKVKKLAEGGWAIYATDTKTKQEAQVGYIGANLDPKNWLPEGTKIENS*