Scaffold Ga0119951_1000139

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000139
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50326
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (75.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F001176	Metagenome / Metatranscriptome	756	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007921	Metagenome / Metatranscriptome	342	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100013928	F000369	AGAAG	MEIELADHYDRMNKVVEELLKGNNPTQIATLTGFKRAEVVELIGEWKSVVHNDTASRERAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKSNALKLIADIETKRIGMLQQVGLLDNAEIATQIAETERKQEVLVKILKDVTTSCPKCKLEVAKRLSQITGIIESVVVEEASGI*
Ga0119951_100013949	F002060	N/A	MDLLSVSIAISAAILSGMGTAIISGIKESKREKTRQAEREHDHLKLELKDLKIQLYQVERDLTEWKDKYYSAIQELIVVKAELEETLIKISLIDVDFHTHED*
Ga0119951_100013954	F042904	N/A	MADQQTVLEGIIEDVATDLYTKWTAAMPEEEKNEVAFRAMASNAQETTFFVVQNFMNRFNAAADELKDK*
Ga0119951_100013962	F001176	GGA	MSMDGTGMTPPPQSSAAGAVNSTEVGRKKPQQGKFRSGIQDQRAVTKIDTNKHGIRRETTTGGPKKTGRKKV*
Ga0119951_100013965	F007921	GGAG	MIEWLVNRIFWWTPLREAMFDEVHMYDELAERIKEYKEEGPTNLTWAEGDTWYGWNYNPEKNRYYFDDIGNKSLMGLWEDQWLREAKDNESR*
Ga0119951_100013984	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMIGLDPQAMTPLTFNIGTGSIEKVSRLRDKYNLIESYMSDYEPTGYTGR*
Ga0119951_100013985	F003422	N/A	MTNELVSSVYTFVCDPDECDCLIQVTSSDGFGFPSGVVELTCPCGRKTTLVSVEHARIPSTTQTKGNTMDGMTTENLPLSDSEKYNPDLLVTYKVLNGYSDATYATDKVRNIEWDLHNSRTNSKAVSSLQNKIGLVKDIISEAYADSEDQETLQAIAEALEIELVKEIEWSASIEVSGVISVNLLEDTHFDLQYEIEDAIYADSHNGNIQVNDQEICNVRENC*