Scaffold Ga0119951_1000117

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1000117
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54258
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (83.13%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F014968	Metagenome	258	Y
F016389	Metagenome / Metatranscriptome	247	Y
F030064	Metagenome	186	Y
F089937	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100011716	F089937	N/A	MSNRLRYELGDIGRSFVYQFVADGTTNRFLIPYSPLDGAYLAINSDGVDVSADVEVEEATGHIVFDDTPAAGDVVIVAGNYFKYFTETEVCQYIDDAFAQHTTFHTDSYGRTMTMANLPTVEEYPVIIYASTLAMYTLATDASFDIDIQAPDGVMIPRSERYRQLMQMIEVRKNQYKELCSQLGIGLYKIDVFSLRRISKTTNEYVPVFEPQEIDNKSPKTRVRLPIPTYGNVKPTPTTVVQDLNIYEGDDYEFSIRLDFEVNNLTPLAEIRSLPGAAVVFAEFTVTKPNITEDGDNQRTLVLSLTGEQTRLLPARSYYDVQLTDAEGVTHTYVSGIIFVTKEVSQ*
Ga0119951_100011724	F012098	AGAAG	MPKVHNVGSLFVQVTRFPYEWGNKLVVRGWSQEIEEPYRTATPFIVRLPKYHGLVLGKWGAMKDEEEALSGALARREVTYEDFTEEAGWTPAPESNRETSVDGLYSRFDLMDGAVNVYDRQKHFDMAEAPERG*
Ga0119951_100011727	F016389	GAGG	MKLIRKFAIQGHAIPSSAHSPRGPFPPEVLAGPQMDQAEYHSDSLHVGLDDVKFFKCKDCRTVLETNELEDHDCDDFK*
Ga0119951_100011731	F030064	N/A	MTIGIVTGALISLGVLLSPLYKRIKRFMQWMERFMRDWEGEEASPGRDEVPGVMQRLNKLDGELSQNGGKSTKDTVNKLYANQELVMEAFVEMGERLIAIENCLNKSEINTPNPVN*
Ga0119951_100011744	F014968	GGA	MIVNLSKEEVRACADIALNRWMMKFGSIDRPNYAGDNKKYLEPEIAANVRTIVAEYAVAKLYKQPFTFPFYTNEEHYFRKDFPDVMPCYEVKSVRTKDEIPVFPKDIRPGVILVGARVLDRDYYSEVEVYGWLPTEECTKDEYHYAPENSWRIPLDKFNDTIPG*