Basic Information | |
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Taxon OID | 3300011998 Open in IMG/M |
Scaffold ID | Ga0120114_1059793 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Tennessee |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 742 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Axel Heiberg Island, Nunavut | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .35 | Location on Map | ||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039536 | Metagenome / Metatranscriptome | 163 | Y |
F059797 | Metagenome / Metatranscriptome | 133 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0120114_10597931 | F059797 | GAG | MLPEFDVTVLTFRSGSHTVRVEATDPTAARGLVQAELDGGQGHCPAEWCTDDVDSTLLDVKQVVLDDVTIIAADGVGPGTFYADNSLRHKVSAHGL |
Ga0120114_10597932 | F039536 | N/A | VYSYGITEPQAQLDWDVDAARALIADRPRAAQRLETNWLESWLTERTSVTPEHLDHIPARKLDEPGILVEIMAGPPGGEPQPFRILIDGTHRAARKLRDHQDYWAFLLTEAEQYSICTYRVEGRVAELPSFPGPGITDREAGVFLSLATESNVA* |
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