Basic Information | |
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Taxon OID | 3300011998 Open in IMG/M |
Scaffold ID | Ga0120114_1002877 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Tennessee |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4711 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Axel Heiberg Island, Nunavut | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .35 | Location on Map | ||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002548 | Metagenome / Metatranscriptome | 549 | Y |
F022212 | Metagenome | 215 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0120114_10028773 | F022212 | N/A | MRRILAWSLFLIAACSADNAIDNAPDWLHVLHHKKAAVAPSATAREKQVYADSLAAFVRKYPAHPRARQVYQSVQLEFARELASLGRYQDAIRFYRAVLSSDPTNAAALHGVSDAFEHLAISRQKLLTLQKGMSERDVAGLLGNPIPGWTDRTERRDSTVESWYYRTTEGGVAGVYFRDGELFAAEENSHTKLVPLSQARAQ* |
Ga0120114_10028776 | F002548 | N/A | MPKSEAQTVTEVRSPFVERRRLRRIRMIVELTHNLISSDVTVSHREAHCLIHCARKAILQLYPGFEDRYERVIRPHFERMLAQRWPNEDPLNPTDCETVN* |
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