Scaffold Ga0120114_1000144

Overview

Basic Information

• Taxon OID: 3300011998
• Scaffold ID: Ga0120114_1000144
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26301
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005778	Metagenome / Metatranscriptome	390	Y
F090796	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120114_10001447	F005778	N/A	MQVSQVAYDRFVLELPPADATWRPLADPECLAETAAWLWDFGPKPLIAVIGVDKAAPSWLAAWKSRGVRFAPAGASAGVAIVLANRTDLERFLSEGAPHERTVLLWPRASEAKTFEALNGAPNAWLKTVDGHATIQRGGEVYEVHSVLG*
Ga0120114_10001448	F090796	AGGAG	MRLVVTVLVVALACLAGLWLVSVDARTDDTGIEAGLILLIATALSAVRPRAAILIAFIVGAPIPIAEALRSGSFPPGIVALGLSVAGALVGAYLGNMVRRSASSTSA*