Scaffold Ga0120156_1008195

Overview

Basic Information

• Taxon OID: 3300011996
• Scaffold ID: Ga0120156_1008195
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2236
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007508	Metagenome	350	Y
F015171	Metagenome	257	Y
F025546	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120156_10081951	F025546	N/A	RRSLAVFRDIMNVPDNRIELVLNQRVPHPPLERAAIEGILGRKMSVTVGFDDSRPEDATLAGGLVLQRDASSLVSRGAIELARVVMANLKLSG*
Ga0120156_10081952	F015171	N/A	MLLVAGVLELGRGYGYAIATSDAARDGARYVAGKTALTDGPGLASMCSLITADLTAVTTSIVCPTLVAHAPPFVSGTDFTNPTGGQAVVVVYCGTSVDCRGTPNPQFQSRIDVWVYYGFNDLNLFGGRITISGSSRTTTSW*
Ga0120156_10081953	F007508	N/A	VVLLIIGATVDMGRGLLLYGLLSGASRDMARQASLEYYSGSNNLPPSCTALAAPCGLKSIVTGAHLLDSLGASVVYLDSTVIGSPPTYGTYVANADPTQPGTISLSGATNNTVYVFIYELDPSNGNTRWSCPGCAAASGSAVRNPGNQRVVVDLKFKWQPVLATFLGIPTAITFDSQTVGRIEF*