Scaffold Ga0120156_1002171

Overview

Basic Information

• Taxon OID: 3300011996
• Scaffold ID: Ga0120156_1002171
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5603
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003319	Metagenome / Metatranscriptome	494	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120156_10021714	F003319	GAG	VKEGRALGFFAGVSAALIVIATMVLRTFFRTTTEHRAMLVSAGLAFAVQLGSYALLRPARAGRGAPGELLIRWGIGAVMRLFVLVLYAPLARVMFLSLDAALVSLVTFFFMTMMAEPLLLEYDR*