NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153800_1006504

Scaffold Ga0153800_1006504


Overview

Basic Information
Taxon OID3300011995 Open in IMG/M
Scaffold IDGa0153800_1006504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1110
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.935556Long. (o)-81.653889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051687Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0153800_10065043F051687N/AKAKAATPVRDLATIRENQVGKPNSQYAKWKARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSAVTRNHDEPDIPQGRGQWHGGQTKLTASISVPFLDAPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRAVAAIARS*

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