NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153800_1006041

Scaffold Ga0153800_1006041


Overview

Basic Information
Taxon OID3300011995 Open in IMG/M
Scaffold IDGa0153800_1006041 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1146
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.935556Long. (o)-81.653889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022415Metagenome / Metatranscriptome214Y
F074411Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0153800_10060411F074411GGAMFNGKGIMQTTIKLTEKQVALLLQILDEQISVGNIEASDKALADEVLEILETAENKITSLY*
Ga0153800_10060413F022415AGGAGMSKMSNLHMIITDAIACDLNEDFIIDLMVEEGLPREACPEILRVFKEVESV*

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