Scaffold Ga0153800_1005595

Overview

Basic Information

• Taxon OID: 3300011995
• Scaffold ID: Ga0153800_1005595
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1186
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.935556
  • Long. (^o): -81.653889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030414	Metagenome / Metatranscriptome	185	Y
F066730	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153800_10055952	F066730	N/A	LVNNMCDRTVKMKLKKGAILQEVNSNTNSIELNVKGLDTKSFNYKKQSHVNTKEKNADK*
Ga0153800_10055953	F030414	AGGAG	MTNIELIQIEILNQIISQIDHSDLEEARNTAVRFRDKLQEDVDKAESDIDIQLQLETESKFGK*