Scaffold Ga0153800_1001970

Overview

Basic Information

• Taxon OID: 3300011995
• Scaffold ID: Ga0153800_1001970
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1864
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.935556
  • Long. (^o): -81.653889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039946	Metagenome / Metatranscriptome	162	N
F053825	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153800_10019702	F039946	N/A	MGLLGKILLNEGITVFRCDVLIKTRADQNKVEIYNEIRALEGVVVVTIEQSDFLNAKATKDYEYSLLKIKYIGRGDAKSSIKDIGIDAVTKNRVPGLLQFIPRYPTINKVGSY*
Ga0153800_10019703	F053825	N/A	MKLLDIIKELDRPKQIYADKDPRKQVNITDLTPEEKDKLFADGSLLVKMPADPNRPETSVSQVINLPKMDQVKKDIIQYKKEFDVFMFSTDPDIQAIAKEINKNFNQLYRVLNALDKSIDLKKRGRI*