NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153800_1001280

Scaffold Ga0153800_1001280


Overview

Basic Information
Taxon OID3300011995 Open in IMG/M
Scaffold IDGa0153800_1001280 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2273
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.935556Long. (o)-81.653889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057312Metagenome / Metatranscriptome136Y
F068783Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0153800_10012802F057312AGGGGGMSGWYNWLQQTWSSLAEAVDMSDANTPTEPEPVGCEIFQDALDQLTDELDTICDRIDFNLEQLWICRQAKAQAFGGIEPGRVNMTRQSISGAQRLLQTARSRVHQVIGEIEIVSTPPQQQAVTE*
Ga0153800_10012804F068783AGGGGGMANNVLIKYGSKQTLTCAVASLASDTNLLAGIESSVIDNTTDGYTDIIVSGKLTTGTSPTASRSIEVWAIAWDGANWPDVFDGTSSSETITSSDIKNVICKPVAIMSTNNTSDRTYHFSGVSLRSAFGGCLPSKIVLFPVHNTGVNLNSTAANHELSYYGEYPQIQ*

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