Scaffold Ga0153800_1001280

Overview

Basic Information

• Taxon OID: 3300011995
• Scaffold ID: Ga0153800_1001280
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2273
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.935556
  • Long. (^o): -81.653889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057312	Metagenome / Metatranscriptome	136	Y
F068783	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153800_10012802	F057312	AGGGGG	MSGWYNWLQQTWSSLAEAVDMSDANTPTEPEPVGCEIFQDALDQLTDELDTICDRIDFNLEQLWICRQAKAQAFGGIEPGRVNMTRQSISGAQRLLQTARSRVHQVIGEIEIVSTPPQQQAVTE*
Ga0153800_10012804	F068783	AGGGGG	MANNVLIKYGSKQTLTCAVASLASDTNLLAGIESSVIDNTTDGYTDIIVSGKLTTGTSPTASRSIEVWAIAWDGANWPDVFDGTSSSETITSSDIKNVICKPVAIMSTNNTSDRTYHFSGVSLRSAFGGCLPSKIVLFPVHNTGVNLNSTAANHELSYYGEYPQIQ*