Basic Information | |
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Taxon OID | 3300011995 Open in IMG/M |
Scaffold ID | Ga0153800_1001237 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2299 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 41.935556 | Long. (o) | -81.653889 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039946 | Metagenome / Metatranscriptome | 162 | N |
F053825 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153800_10012372 | F039946 | N/A | MGLLGKILLNEGIVIFRCEVLIKTRADQNKVEIYNEIRALNGVVVVTIEQSDFLNAKATKDYEYSLLKVKYIGRGDAKSSIKGIGIDAVTKNRVPGLLQFIPRYNTIIKVGSY* |
Ga0153800_10012373 | F053825 | N/A | MKLLDIIKELEKPKKIYADKPTDRKLTIADLSPEEKEDLFKQGSLAVPMPSDPSRPETSISQVINLPKIDQVKRDIISNKKEFDIFTFSSNPDIKEVAKKINKLHNELFRAMDALNKLLELQRQGRI* |
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