Scaffold Ga0153800_1001149

Overview

Basic Information

• Taxon OID: 3300011995
• Scaffold ID: Ga0153800_1001149
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2391
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.935556
  • Long. (^o): -81.653889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005585	Metagenome / Metatranscriptome	395	Y
F014016	Metagenome / Metatranscriptome	266	N
F017667	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153800_10011491	F017667	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVNSCDVYIIKTELYRTEADIHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIK
Ga0153800_10011492	F005585	N/A	MNGSKVLETHYSTGASSMATRGTIYYAFSKSVKHSVFSSETHLTWQLLLSRPNSQEWWKVQSAKIRISISLDMPLSWVDYDFRVQKIGTTLSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR*
Ga0153800_10011493	F014016	GGA	MVNKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVDADVS*