Scaffold Ga0153800_1000063

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153800_1000063

Scaffold Ga0153800_1000063

Overview

Basic Information
Taxon OID	3300011995 Open in IMG/M
Scaffold ID	Ga0153800_1000063 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11555
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	41.935556	Long. (^o)	-81.653889	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013528	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153800_100006320	F013528	AGGAGG	MITIEGFWEWKSTYDPAPPKPNKTYNKFFWWRRYQEHKTLPKMSSIWDKAKNGDYDVSPYWKQREWEYWFEEQELEKYRANYKGSYEDLGWGERQISKLYWQRRKRLLNDAERDEYNRWQLLMKDLKNNFGGNEDTIKTMFESFEGTMVEFITAYRDSRNLPKIQPPPKF*

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