Scaffold Ga0120146_1002657

Overview

Basic Information

• Taxon OID: 3300011992
• Scaffold ID: Ga0120146_1002657
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5243
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003206	Metagenome / Metatranscriptome	501	Y
F007508	Metagenome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120146_10026571	F003206	N/A	LMTGDLTGRVLDIVISWQRVILVDLGTSLAEAALAVIERAECLVMVVPPEIAAMTDARRSLAVFRDIMNVPDNRIELVLNQRVPHPPLDRAAIEGILGRKMSVTVGFDDSRPEDATLAGGLVLQRDSSSLVSRGATELARVVMSNLKLSG*
Ga0120146_10026573	F007508	GAG	VAPVVLLIIGATVDMGRGLLLYGLLSGASRDMARQASLEYYSGSNDLPPDCTALTTPCTLTSLVTGAHLLDPLGATVVYSDSAASTSPPVYGTYAVNADPTQPGTISLTGASPNTVYVFIYEYDPTGASPTRWSCPGCAAASGRAVRTPGHQRVVVDLKLRWQPVLASFLGIPTTIVFDAQTVARIEF*