Scaffold Ga0120153_1028768

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120153_1028768

Scaffold Ga0120153_1028768

Overview

Basic Information
Taxon OID	3300011991 Open in IMG/M
Scaffold ID	Ga0120153_1028768 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1163
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000658	Metagenome / Metatranscriptome	954	Y
F011429	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120153_10287681	F011429	AGAAG	MYCWQGHRFRFAGRSADTEAVAGYLIAVIAFALPLAFGATGLGRPRLVIGLGAVVACGWAVALVTGRAQDGQGHHLVPVWFLAGLVAILYVLWCGGLWVGTRLKRARAR*
Ga0120153_10287682	F000658	GAGG	LVLACLAGGLAGSVPSLGLSRSTPGFESAQQACGRLEFVSGLEAVFGRRKTHQQALTFRTQVTARGFVNANIIQGCDGFRVVVRGIDTFDVGVDLQDEARREGFAVTLECIQAKPLGRLEAIFGHGRDRPTATALVNRAAAAGFEGVKLRNDPCGGFEAYLAGFEDQREAEAFAAQANARGFNVVLERN*

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