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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011984 Open in IMG/M |
| Scaffold ID | Ga0119931_1002448 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hong Kong |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2065 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | ||||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007855 | Metagenome / Metatranscriptome | 343 | N |
| F044982 | Metagenome | 153 | N |
| F052549 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0119931_10024481 | F007855 | N/A | FTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREASWFGWFAKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ* |
| Ga0119931_10024483 | F044982 | GGA | MEFDVFVGGSGKKLTNVQRQALRDFGVNLAEGAIDNKSYALVKKWLDGVIKLAKQNLANSGAIASDSLSASIDFEPISLTDTSFVVAIVANDYWKFVDLGVKGAKSSSRAPNSPFQYRDKKPIWKHRPPVRKIQEWIAFKSIPLQGRDKIAANRALAINISNKIWREGLRATNFMSNAVTEDMVAVLTENIAEVLGKSISVATVR* |
| Ga0119931_10024484 | F052549 | N/A | MLFKVSGSLTSGTNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQTGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNITFAGNLEQLELADWSGGVYFPSGTIANNITRILTTPTTRTVYSDNYGWLAIGQFGGAVGKAYIQYWQAGASGFSRQFEVTPTGLSGSNIVRFGVGPMNLKALTSGQCSDGQAGSVNFPSAEGGFYDVYFYSLANPSNLTIRQRYVIGPCQRFNSQSVHFINKYGGIDSYTFTLKNRKRANVERDT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |