Scaffold Ga0119931_1000649

Overview

Basic Information

• Taxon OID: 3300011984
• Scaffold ID: Ga0119931_1000649
• Source Dataset Name: Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3935
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027061	Metagenome / Metatranscriptome	196	N
F038911	Metagenome / Metatranscriptome	165	Y
F039496	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_100064912	F038911	AGGA	MAEKVKFTQVTRTICPRTQIHYLDAISEDGMHWSAEMTPHQEKWLVYQKLWTRDPQQPYPI*
Ga0119931_10006498	F039496	GAG	MMTDISNLSFKQLQQLEKQIEDRKYELSNSKNCVEGYKITFCVKFNPAAHEFDELRNKEEFGDYLANDVTNYIIKDGFPDLDVSGFEVEWMDDEDKVEWKDFWEDGE*
Ga0119931_10006499	F027061	GGAGG	MTTRALQILECTMELSMRPKSKDRQKLIARVINEVADRLCTDCGELEDPVFVLREIADEVESL*