Scaffold Ga0119931_1000416

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119931_1000416

Scaffold Ga0119931_1000416

Overview

Basic Information
Taxon OID	3300011984 Open in IMG/M
Scaffold ID	Ga0119931_1000416 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4892
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F082581	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_10004162	F082581	N/A	MNNVDNVSTATSTKSTVKRGRPAKNLKLILNKSFTIKDLQNLNPDVKFVTIRAAILRGLSNGKFTKLNRNVKSGKKGKPANIFINTKVYQANLANLTKSKVTAEPVTA*
Ga0119931_10004163	F006181	N/A	MKKNLIHVIYLDEAVYSFVTINDMSVEDNLERVFAEWNHGSGMECKMFIESKKRSLSVNDIVCVNGTHYQCRPFGWKKVTAEYVNELEKEVALHPTRHAYGTWHALTEIMYGRRHDDNEALLEGVETV*

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