NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119931_1000127

Scaffold Ga0119931_1000127


Overview

Basic Information
Taxon OID3300011984 Open in IMG/M
Scaffold IDGa0119931_1000127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8952
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016966Metagenome / Metatranscriptome243Y
F038202Metagenome / Metatranscriptome166N
F040100Metagenome / Metatranscriptome162N
F041760Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0119931_100012710F040100N/AMNTDLNTLFKTITENVPNYIMFITLILLVYLMAVAFVKILCENIIKVVLAARAPVSFKIKDIENTENT*
Ga0119931_100012715F016966N/AMNKVTFKRVKNQSLPNLYVASKDGVEVGFIYKPTDSKSDRNAWRSYVGIGDKAQFLYHTWDMNDAMEAVKLAVN*
Ga0119931_10001272F038202N/AMKVKVTDIVYDTDIDDDSTTFVLNSELPSEMIVEVDGIIDIESEIADAISDTTGWCVHGYNYEIL*
Ga0119931_10001278F041760N/AMTKVLAVKYPSSTDRVRQTVNHLRQVFDVPDVNKIKELFGTLLFNDNNLYRYNYCLVRFDNKLYVIEPVDLVKCTYVRKAVDYHPFSDMI*
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