Scaffold Ga0119931

Basic Information
Taxon OID	3300011984 Open in IMG/M
Scaffold ID	Ga0119931_1000084 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011984 Open in IMG/M

Scaffold ID

Ga0119931_1000084 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10558
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10558

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F024095	Metagenome / Metatranscriptome	207	Y
F067530	Metagenome / Metatranscriptome	125	Y
F088525	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_100008411	F014726	N/A	MGFQSESIISAASQRFGVIDYTRWQAIRWQWYSYITYPSAGSTSLTFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIANNDVDGFTRANQATLDTRALASDFIGGFVQAGVLNFSVGARPLATIVKPFQYAPPPGSPLDLENSYVNQISAAPIPAAGAAQVVGVPWVTQTKMRPNVYFTDPNILIEAEQQFTVTLDFPSGVVPVLATNVVNDTTNPLKVGVIFDGLLLRPVQ*
Ga0119931_100008412	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTIEQTNLVKNASFGQEYFALTQIRTYAGFVAQARQGFTTGTNFTYRGYTALADSAMEKLQTVLNSGVLEIRFAQKLYYQIARPFIQCPAGFGIDIQSLASARTGVAAETQAPDTNWIARPDYRATAVYNIDPIQIVEPEIQIQAAINFPNGNTPNFTNSALDTANGTQTPAIELGLVFAGYVIRPSQ*
Ga0119931_100008413	F024095	GGCGG	MDNTNSLPFVYVVTSTIAASSTSSTTLIMQADSRFELMGILGTGGQAATTEDGQVAPNNFTLQIRDQTTGRDLMSAPVPQRVLCGNAFNQFLQKRGIVFEPQSNLLFTFTNLTANTNNVTIALHGYKIIL*
Ga0119931_100008414	F014837	N/A	MIERNINPKPRFVTIISSVPSTGAFIGVPLATLHRQAFFQFPQDSIIHYISVNSTFSVNGAAAQAIAALSYNQGALSIQPSLNAGADNFQDDIIWRDELLNPAAGVVTTSKSVQIMMNEFFCHTGTGFGIYVNGINGNVNVNATIAFNPIAEWINFREPTYGARI*
Ga0119931_100008417	F067530	N/A	MQTLTLTLDPTSANALITALEVSRRQGDFSVARTAVTVISELIRQDEEFKAKASGAASPPPVQPQTVE*
Ga0119931_10000849	F088525	N/A	MILPIRQSELNAVGFTGYFPALSWRQRKEVAALTLNRVGRRQDAFLLEINNVNAVQGITYVADVPPLRAGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119931_1000084

Overview

Ecosystem & Geography

Associated Families

Sequences