Scaffold Ga0119773

Basic Information
Taxon OID	3300011982 Open in IMG/M
Scaffold ID	Ga0119773_1000426 Open in IMG/M
Source Dataset Name	Human oral microbial communities from Beijing, China - VLP3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Institute of Life Science, Chinese Academy of Sciences
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011982 Open in IMG/M

Scaffold ID

Ga0119773_1000426 Open in IMG/M

Source Dataset Name

Human oral microbial communities from Beijing, China - VLP3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Institute of Life Science, Chinese Academy of Sciences

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14797
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14797

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From Beijing, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From Beijing, China

Source Dataset Sampling Location
Location Name	Beijing, China
Coordinates	Lat. (^o)	39.9	Long. (^o)	116.3	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Beijing, China

Coordinates

Lat. (^o)

39.9

Long. (^o)

116.3

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F074985	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119773_100042610	F027205	AGGA	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRN*
Ga0119773_100042611	F036281	GAG	MVSLIQVSEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0119773_100042612	F074985	AGGAGG	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQTAWKAIHMGSTKRINLKQFEELYINDTFHHLHPVIVNHDGKFWHVMGLELTVDEADSVWHLYLKRQDSDFMTCIKMSPSQKFLYNPLSNSLALDDPTEEITDHEKIKEVLRKEGVWEVTVSGVPMKLIRVMNIAADILFFVFKDEEDRSRYYYARRSTKLRVVTDVNTREMKYLLDHVKAIHVD*
Ga0119773_10004263	F018385	GGA	MMAERATRWVPYKELSIEKDRDPVTDDEFIYGNNVKHFTLTVYSPEGRVSKYWNARVLPDQVGNCRIACPRDGKILCFNWFNWTAYMFTHDGMNELVFMPDSSRRIVSQLSFDNSGGNGVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119773_1000426

Overview

Ecosystem & Geography

Associated Families

Sequences