NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119773_1000384

Scaffold Ga0119773_1000384


Overview

Basic Information
Taxon OID3300011982 Open in IMG/M
Scaffold IDGa0119773_1000384 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Beijing, China - VLP3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Institute of Life Science, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15443
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From Beijing, China

Source Dataset Sampling Location
Location NameBeijing, China
CoordinatesLat. (o)39.9Long. (o)116.3Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101360Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0119773_100038422F101360AGGMSKEDALRRAAIAAHIAKVASQEKKKALKELKEYMAPGDTSKPSIDGRQVGTVSVSLPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAANALDGFIKQTGEIPDGVEVVQGDPRISVRISAPQEDAIRDLIASGDIRLIEMEEAQE*

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