Scaffold Ga0120379_1004180

Overview

Basic Information

• Taxon OID: 3300011979
• Scaffold ID: Ga0120379_1004180
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5423
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. E2-28 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039427	Metagenome / Metatranscriptome	163	Y
F061418	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120379_10041805	F039427	N/A	MSKKTLTFVTGIVTAVQTAAVAAVTYYVNDNAAAINSAIVIAGGAIIEICNLFVKPE*
Ga0120379_10041806	F061418	N/A	MSKRNETLQALCRDYLCKLRHMGKKHGIDVDGLIRLNRQKKCEATQHEVELLSRAVDDERLSRSEVPKILDKSYRQANEDGDFDRIKKLKHQGIYSKVSALLYKNRK*