NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119798_1004001

Scaffold Ga0119798_1004001


Overview

Basic Information
Taxon OID3300011976 Open in IMG/M
Scaffold IDGa0119798_1004001 Open in IMG/M
Source Dataset NameHuman subgingival plaque microbial communities from Los Angeles, CA, USA - S13-02-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6165
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Subgingival Plaque → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084362Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0119798_10040016F084362N/AMNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSIDIAVKINNKPAGSLQDSEKRPEVAAEQKGFWWEK*

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