Scaffold Ga0119808_100028

Overview

Basic Information

• Taxon OID: 3300011928
• Scaffold ID: Ga0119808_100028
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S17-04-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69200
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (48.28%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051211	Metagenome	144	N
F095630	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119808_10002851	F051211	N/A	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFINGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP*
Ga0119808_10002879	F095630	N/A	MRYSPLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDAELHNPAAPNVYNEALRVFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMAYRKSYDKSSVDTLFCIPYLKYGKKSNKLFPECVLEYSVDEEHIKSPIDQALAAIVVQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFTAYVQYLLKSPFCSNLQKALLRCSRNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*