Scaffold Ga0120089_104453

Overview

Basic Information

• Taxon OID: 3300011921
• Scaffold ID: Ga0120089_104453
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 2M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1389
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002085	Metagenome / Metatranscriptome	595	Y
F071232	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120089_1044531	F071232	N/A	ADVLRGSGSTVTIPVHRNLITTVTSPINAVIGQYGTTVSMGGNTYTGTTFQVVLRDYPTYTLIPMTNDSFIEWSGTFKAFESVL*
Ga0120089_1044532	F002085	N/A	MNVITPVENTNNIRYADFVRVTTPSAVYRFATTPAPITVPAVDAQPFNAVSVLMKVGDTQRDIKSTANETTFTLVGIDTAMLGWVLGNQIKGSQIEAWKGFFDTDGALITTGGTGGLYQFFNGYINSFSIQEEWMEELRQFVGVISVAASSIQLILKNRTAGRYTNDNNWQFFAPNDTSMNRVPFITNINYNFGKDAPANS*