Scaffold Ga0120089_101329

Overview

Basic Information

• Taxon OID: 3300011921
• Scaffold ID: Ga0120089_101329
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 2M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3835
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004639	Metagenome / Metatranscriptome	429	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120089_10132911	F002934	N/A	AVGAFLEVWGTTSNFELNYRSILGAVVAGVFGYATPKK*
Ga0120089_1013293	F004639	AGG	MGHLQFLNQDGEWETFPSPEQEANLRANAEVLEELGYKLICQLCNQFPSAVQIKDRYQKQEWTCEKCHTINSAGKA*