Scaffold Ga0120089_101170

Overview

Basic Information

• Taxon OID: 3300011921
• Scaffold ID: Ga0120089_101170
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 2M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4306
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013634	Metagenome / Metatranscriptome	269	Y
F025485	Metagenome / Metatranscriptome	201	Y
F031456	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120089_1011705	F031456	N/A	MAFIGNFPASGSAVFNLDFLPEYVLVDSANQATQSLSNFSVVTSGVQLMSITNVNRLTALAKFDSGAILDDFVGTELSRTSSYIKLATGRINKTTTITGTNGVALARAFYAASTNISNVARRAVEQSINPSANATFDNFEALFFDETNILRAQITFANGFTDEFTTVELRALYSTYHVSDESSLLSGLVCIDADSGAGLISQVVLFNGAGGSTVVLKSDYVQL*
Ga0120089_1011706	F013634	N/A	MSNCNKNQNMAIQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASAQTKTAPLNEKVMNSLQPSAKSTPVSGGISFGGEASRKTYLPFAIVAAVIAAFYFMRKKGGRRRR*
Ga0120089_1011708	F025485	AGAAG	MENVRKFLPLIIGGIVAIAFFFISRKVRQGSGNSQERSEILEKAREAKLAKSILKKSENEESTSNIES*