Scaffold Ga0120089_100070

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120089_100070

Scaffold Ga0120089_100070

Overview

Basic Information
Taxon OID	3300011921 Open in IMG/M
Scaffold ID	Ga0120089_100070 Open in IMG/M
Source Dataset Name	Mine pit pond microbial communities from Vermont, USA - 2M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Vermont
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	62653
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (80.95%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008879	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120089_10007064	F008879	GAGG	MFKKGDVVKVKTVVPQGPVKALRMDEDGNVYCLIEWTDVNGETQERWIDESLLTSGD*

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