NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120090_107946

Scaffold Ga0120090_107946


Overview

Basic Information
Taxon OID3300011918 Open in IMG/M
Scaffold IDGa0120090_107946 Open in IMG/M
Source Dataset NameMine pit pond microbial communities from Vermont, USA - 2S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Vermont
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1235
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location NameUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0120090_1079462F031456N/AMAFIGNFPASGSAVFNLDFLPEYVLVDSANQSTQSLSNFSVVTSGVQLMSITNVNRLTALAKFDSGAILDDFVGTELSRTSSYIKLATGRINKTTTITGTNGVALARAFYAASTNISNVARRAVEQSINPSANATFDNFEALFFDETNILRAQITFANGFTDEFTTVELRALYSTYHVSDESSLLSGLVCIDADSGAGLISQVVLFNGAGGSTVVLKSDYVQL*

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