Scaffold Ga0120090_101062

Overview

Basic Information

• Taxon OID: 3300011918
• Scaffold ID: Ga0120090_101062
• Source Dataset Name: Mine pit pond microbial communities from Vermont, USA - 2S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Vermont
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4625
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location

• Location Name: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F066485	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120090_10106211	F014503	AGG	VRVSIQHWRFEDGSTVPNPGSRWETEPPPRGWYCWVYPIDDHEFEIWMARHCPTADYTHRFNSGNPMWTVYIKDDAEATLFTLKWL*
Ga0120090_1010622	F066485	AGGAG	MKIGFSLGRCVRDIVRGEVTTDDVAFLITATSINTTEQLFQVIQMYTYEDGYLLGLDEDHCQRVALELWNTNRLLQPRKQGLHRHKQPEDSVWVDIFPTKLSDNEVVKSAWDNYRLMLHMVENLENQATEIFKV*