NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120090_100063

Scaffold Ga0120090_100063


Overview

Basic Information
Taxon OID3300011918 Open in IMG/M
Scaffold IDGa0120090_100063 Open in IMG/M
Source Dataset NameMine pit pond microbial communities from Vermont, USA - 2S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Vermont
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39988
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (84.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location NameUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F034856Metagenome / Metatranscriptome173Y
F066716Metagenome / Metatranscriptome126Y
F067678Metagenome / Metatranscriptome125N
F079990Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0120090_10006314F034856AGGMTQYIFTTPTVEETPMGGGVLFSRYKMTKGVSVLRVNGIYSSYRYPAQTDIANASEFYLGGTKTVITQETADALTAQGYGEYITPA*
Ga0120090_10006316F067678GGAGMATNYEYDDEDDDTSTDTGINQLRKVNRALEKRAKELEQELLGLKSQTRQRTVKDVLQAKGLNPKIAAFVPQDIDTSEEAINQWITEYGDVFGATTQAESQPTQQSQDVTAQARINNMVATGQAPSLDQDSMSRVLQAKSRDELDALLGL*
Ga0120090_10006321F066716GAGGMAIEASKNFKVSATGGDGSSGQAAQYAAGIDNAGDFYELQTQAPMSKSGVQLPNRGNPVAPKMSVGDIVPLDAPTLYPEEGVDTGAALGPNAGQEVMAAPSMLAAQNNEDIAALAASLPFYAKIAESPQASNATRNWYRYIRSQVQGQVQ*
Ga0120090_10006322F079990AGGAGGMKKASALKKGYSKKPANQGTAGKPNYQKPMTAKKASSKGGKVYQTNAPSGTRGSKNK*
Ga0120090_10006343F001515N/AMAKNSSFDLDFGYGRKGEQLVEELLTQGKTVEVKRDRKWWVTNNLYVEVECWYMKSKSWEKSGVMVTEAAYWAFVLEQGVLMVPTSHVLYAIKEFGRAITCEIPPNKSKGYLITVDDLLMAMRKLKNEKAEIKDE*
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