Scaffold Ga0137463_1076821

Overview

Basic Information

• Taxon OID: 3300011444
• Scaffold ID: Ga0137463_1076821
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1252
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9776
  • Long. (^o): -107.0024
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002523	Metagenome / Metatranscriptome	552	Y
F008095	Metagenome / Metatranscriptome	339	Y
F011883	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137463_10768211	F002523	GGA	MLVIVSVSRLDDDQVEIRVAKPQHDSNCAQVYPSEKEVRAVLSGLGISHDVIDLHLKLLPQVSANEPLKFPPTDVPRHELLSRGFRL*
Ga0137463_10768212	F008095	GGAG	MENSKDQDRGKGAVEEDKQSQGGNTSMQGQLGHRDEDVELKNADSNLAG*
Ga0137463_10768213	F011883	N/A	YHISERIASLKNEMSELRVTNALSCYRKGTLEKSASALRQRRLVEIKLELADLMKRCA*