NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137457_1283495

Scaffold Ga0137457_1283495


Overview

Basic Information
Taxon OID3300011443 Open in IMG/M
Scaffold IDGa0137457_1283495 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9779Long. (o)-107.0027Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013621Metagenome269N
F067222Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0137457_12834951F067222AGGAGMDKPFLQTLNLYRGKSAMQISPSPELALVFVSLAPVIPGMENKMPDKNTKKYLWDKKLTASFNFEGALEVAAAAAALAEGKESLVADSK
Ga0137457_12834952F013621N/AKDFIRRYKEVVLETPFGEVHICGSKEVYEELIGQGKLAFSPIELLQLQKATENGSLETIVKIKNSVPGARIKDIIPVDKKPETTQKQS*

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