NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137432_1152074

Scaffold Ga0137432_1152074


Overview

Basic Information
Taxon OID3300011439 Open in IMG/M
Scaffold IDGa0137432_1152074 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)743
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8897Long. (o)-106.9076Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024546Metagenome / Metatranscriptome205N

Sequences

Protein IDFamilyRBSSequence
Ga0137432_11520741F024546N/ALAVVLAACGYQPEIEPPGAATGGSSAPPPVAATGPVSVTPTFAADGCPVDEPTFCEQAAFLANALVLSDADAVVDLSRSVSMDCADLEPDLFPQCDRQDTLNGYVVGDHQGHIFVDGPADYRRTLGFFVEAVDTEYSDELGGAQMQILGVSTCGEGADTSYHLVYLVGLGDPTSTLPADRFLGTYELTQAKGAWAIGATYVGLYTDWQLVLDDPLTQIACGDIQPWVGAAPNPSPPQSESQPTPIPG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.