Scaffold Ga0137432_1002402

Overview

Basic Information

• Taxon OID: 3300011439
• Scaffold ID: Ga0137432_1002402
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5395
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8897
  • Long. (^o): -106.9076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002571	Metagenome / Metatranscriptome	547	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137432_10024027	F002571	AGG	MKNANSMNSQGSPQSADPQHPGLSPWQRLKTKRIAYLTLPLLIMATLVEFVILATGWKYQQMVCLPQGMGVTFFGIGPIGATMLA