Scaffold Ga0137455_1053840

Overview

Basic Information

• Taxon OID: 3300011429
• Scaffold ID: Ga0137455_1053840
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1139
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9777
  • Long. (^o): -107.003
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068279	Metagenome	125	Y
F083401	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137455_10538402	F083401	AGG	MAERKVVYRDDGAIKRTMVWEDNDPLTVHVYTEQDLTQVIENNKLLSELHPSRSTNKVVARGVPVSVYERSILENWDSKDWARWLDDPDNRAFRVWHGRIGK*
Ga0137455_10538403	F068279	AGG	MTGFLSDKCIEIRNWLAIGEDVYPDAVVTSWIRMAEEQLSNVLRVKHMIQVDTCEVDVDRIPLPLDWQEIRLARFVPTGGVLRYNTPDAFYNPEFAEPPEPPYPGRTRRYTILGNFLIVGGAGLSTPQHVELTYYQDIPPLTDTVNNWINKYHPTVYTIKILHVASLYAIEDDRSGVWDKEIVRTVNDMNNAHKVDRASGSVLVQVRRKSFG*