Scaffold Ga0153954_1000318

Overview

Basic Information

• Taxon OID: 3300011418
• Scaffold ID: Ga0153954_1000318
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41402
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (74.42%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Wekiwa Springs State Park
• Coordinates
  • Lat. (^o): 28.7104
  • Long. (^o): -81.4844

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025091	Metagenome / Metatranscriptome	203	Y
F027279	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153954_100031823	F027279	N/A	VNGSSEFTTWVALAGAAIVAGICAIYSSSLYVLIPAALIGAYLGYKGKQFGRAYLEKRIARGGSK*
Ga0153954_100031826	F025091	N/A	VFVGEKDGEMSTWAPSRRARMERIDAEADALIRDLDDRAYQEARRREHEASSDAIAEDWALVAKAIARKTGSRVGLNLSTQLEMNTFFVLDREPGAHREPRPGLEPEPKPNRQPKTAGVPTPQLFRIQFMGAGSESGPSILREDEIRASDVSAAIIAAAIAAWPPKTIGLRILDRDGHEVFGRQKAAGR*